Doryteuthis pealeii genome browser track hub
Trackhub
A track data hub has been generated enabling genome browser access to the Longfin inshore squid (Dpe2.1) genome, pita gene annotation and public RNA-seq data.
Doryteuthis pealeii track hub instructions
The data can be browsed using a track data hub for the UCSC browser. Do the following to use this track hub:
- Visit the UCSC genome browser
- Click the button "track hubs"
- Select the tab "My Hubs"
- Copy-paste the following URL in the text box:
https://trackhub.science.ru.nl/hubs/veenstralab/trackhubs_public/doryteuthis.pealeii/hub.txt - Click "Add Hub"
- The newly added trackhub and its corresponding genome should be the default in the Genome Browser Gateway (home) page of the UCSC browser.
- If the trackhub is not selected, or to select the trackhub again among previously loaded trackhubs: In the genome browser, click the top menu item "Genomes" to go to the Genome Browser Gateway page. To the left, under "Represented species" the custum track hub should be listed. Click it to select it.
- Select the genome and assembly of interest under the drop-down under "Find Position", and click "Go" to move to a position in the genome.
- Browse the genome or modify track settings (right click on the track, or use track controls under main graphic).
- Doryteuthis pealeii JGI Dpe v2.1
